IL_6HCJ_154
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCACUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 6HCJ|1|A2|G|507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_154 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.2144
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6HCJ|1|A2|C|491
6HCJ|1|A2|C|492
6HCJ|1|A2|A|493
6HCJ|1|A2|C|494
6HCJ|1|A2|U|495
6HCJ|1|A2|C|496
*
6HCJ|1|A2|G|506
6HCJ|1|A2|G|507
6HCJ|1|A2|A|508
6HCJ|1|A2|G|509
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain F2
- eS4
- Chain K2
- Ribosomal protein S9 (Predicted)
- Chain Z2
- eS24
Coloring options: