IL_6HCJ_169
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 6HCJ|1|A2|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_169 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.2686
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6HCJ|1|A2|C|931
6HCJ|1|A2|G|932
6HCJ|1|A2|G|933
6HCJ|1|A2|G|934
6HCJ|1|A2|G|935
*
6HCJ|1|A2|C|1007
6HCJ|1|A2|A|1008
6HCJ|1|A2|A|1009
6HCJ|1|A2|G|1010
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain C2
- 40S ribosomal protein S3a
- Chain O2
- uS15
- Chain b2
- eS26
- Chain c3
- eL30
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