IL_6HCJ_193

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

6HCJ|1|A2|C|1553, 6HCJ|1|A2|A|1580

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_193 not in the Motif Atlas

Geometric match to IL_5J7L_055

Geometric discrepancy: 0.3321

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6HCJ|1|A2|G|1550
6HCJ|1|A2|U|1551
6HCJ|1|A2|G|1552
6HCJ|1|A2|C|1553
6HCJ|1|A2|C|1554
6HCJ|1|A2|U|1555
6HCJ|1|A2|A|1556
6HCJ|1|A2|C|1557
6HCJ|1|A2|C|1558
*
6HCJ|1|A2|G|1577
6HCJ|1|A2|U|1578
6HCJ|1|A2|A|1579
6HCJ|1|A2|A|1580
6HCJ|1|A2|C|1581
6HCJ|1|A2|C|1582

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain E2

uS3

Chain L2

eS10

Chain U2

eS19

Chain V2

uS10

Chain e2

uS14