IL_6HCJ_234

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUGU*GCCC

Length

9 nucleotides

Bulged bases

6HCJ|1|51|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_234 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3417

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCJ|1|51|G|1945
6HCJ|1|51|G|1946
6HCJ|1|51|U|1947
6HCJ|1|51|G|1948
6HCJ|1|51|U|1949
*
6HCJ|1|51|G|2034
6HCJ|1|51|C|2035
6HCJ|1|51|C|2036
6HCJ|1|51|C|2037

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain H3

uL6

Chain I3

60S ribosomal protein L10

Chain S3

eL20

Chain m3

eL40