IL_6HCM_044

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

6HCM|1|52|A|1650, 6HCM|1|52|G|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_044 not in the Motif Atlas

Geometric match to IL_5TBW_028

Geometric discrepancy: 0.2123

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6HCM|1|52|G|1522
6HCM|1|52|A|1523
6HCM|1|52|A|1524
6HCM|1|52|A|1525
6HCM|1|52|G|1526
*
6HCM|1|52|C|1648
6HCM|1|52|U|1649
6HCM|1|52|A|1650
6HCM|1|52|G|1651
6HCM|1|52|U|1652
6HCM|1|52|A|1653
6HCM|1|52|G|1654
6HCM|1|52|C|1655

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain j3

Ribosomal protein L37