IL_6HCM_072

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_072 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1698

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6HCM|1|52|G|2358
6HCM|1|52|U|2359
6HCM|1|52|A|2360
6HCM|1|52|G|2361
6HCM|1|52|U|2362
6HCM|1|52|A|2363
6HCM|1|52|G|2364
*
6HCM|1|52|C|3858
6HCM|1|52|G|3859
6HCM|1|52|A|3860
6HCM|1|52|A|3861
6HCM|1|52|A|3862
6HCM|1|52|C|3863

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain P3

uL22