IL_6HCM_082

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUGGAAUG*CGAGAGAG

Length

16 nucleotides

Bulged bases

6HCM|1|52|U|2661, 6HCM|1|52|A|2674

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_082 not in the Motif Atlas

Geometric match to IL_5TBW_073

Geometric discrepancy: 0.2905

The information below is about IL_5TBW_073

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_60192.2

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6HCM|1|52|C|2655
6HCM|1|52|U|2656
6HCM|1|52|G|2657
6HCM|1|52|G|2658
6HCM|1|52|A|2659
6HCM|1|52|A|2660
6HCM|1|52|U|2661
6HCM|1|52|G|2662
*
6HCM|1|52|C|2672
6HCM|1|52|G|2673
6HCM|1|52|A|2674
6HCM|1|52|G|2675
6HCM|1|52|A|2676
6HCM|1|52|G|2677
6HCM|1|52|A|2678
6HCM|1|52|G|2679

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain O1

uS15

Chain R3

eL19

Chain Z3

eL27

Chain c3

eL30

Chain g3

eL34

Chain p3

eL43