IL_6HCM_130

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUCCC*GUCAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_130 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.37

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6HCM|1|52|G|4884
6HCM|1|52|U|4885
6HCM|1|52|C|4886
6HCM|1|52|C|4887
6HCM|1|52|C|4888
*
6HCM|1|52|G|4931
6HCM|1|52|U|4932
6HCM|1|52|C|4933
6HCM|1|52|A|4934
6HCM|1|52|C|4935

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain M3

Ribosomal protein L14

Chain f3

eL33