IL_6HCM_176

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_176 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.2486

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6HCM|1|A1|G|665
6HCM|1|A1|U|666
6HCM|1|A1|U|667
6HCM|1|A1|A|668
6HCM|1|A1|A|669
6HCM|1|A1|A|670
6HCM|1|A1|A|671
*
6HCM|1|A1|U|1161
6HCM|1|A1|C|1162

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Y1

uS12

Chain b1

eS26