IL_6HCM_192

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_192 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.1629

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6HCM|1|A1|C|1047
6HCM|1|A1|G|1048
6HCM|1|A1|A|1049
6HCM|1|A1|A|1050
6HCM|1|A1|G|1051
*
6HCM|1|A1|C|1067
6HCM|1|A1|G|1068
6HCM|1|A1|U|1069
6HCM|1|A1|A|1070
6HCM|1|A1|G|1071

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Ribosomal protein L8

Chain P1

uS11

Chain b1

eS26