IL_6HCM_196

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGGAGUAUG*UGAAACU

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_196 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.3595

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6HCM|1|A1|G|1167
6HCM|1|A1|G|1168
6HCM|1|A1|G|1169
6HCM|1|A1|A|1170
6HCM|1|A1|G|1171
6HCM|1|A1|U|1172
6HCM|1|A1|A|1173
6HCM|1|A1|U|1174
6HCM|1|A1|G|1175
*
6HCM|1|A1|U|1186
6HCM|1|A1|G|1187
6HCM|1|A1|A|1188
6HCM|1|A1|A|1189
6HCM|1|A1|A|1190
6HCM|1|A1|C|1191
6HCM|1|A1|U|1192

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Y1

uS12

Chain n3

eL41