IL_6HCM_256

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AUCC*GAGAU

Length

9 nucleotides

Bulged bases

6HCM|1|52|A|3828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_256 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2632

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCM|1|52|A|3630
6HCM|1|52|U|3631
6HCM|1|52|C|3632
6HCM|1|52|C|3633
*
6HCM|1|52|G|3827
6HCM|1|52|A|3828
6HCM|1|52|G|3829
6HCM|1|52|A|3830
6HCM|1|52|U|3831

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain n3

eL41