IL_6HCM_326

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_326 not in the Motif Atlas

Homologous match to IL_8P9A_302

Geometric discrepancy: 0.1726

The information below is about IL_8P9A_302

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22829.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6HCM|1|52|A|2832
6HCM|1|52|A|2833
6HCM|1|52|C|2834
6HCM|1|52|A|2835
6HCM|1|52|A|2836
6HCM|1|52|U|2837
6HCM|1|52|G|2838
*
6HCM|1|52|C|3850
6HCM|1|52|U|3851
6HCM|1|52|A|3852
6HCM|1|52|U|3853

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22

Chain d3

eL31