IL_6HCQ_046

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

6HCQ|1|51|A|1650, 6HCQ|1|51|G|1654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_046 not in the Motif Atlas

Geometric match to IL_5TBW_028

Geometric discrepancy: 0.1999

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6HCQ|1|51|G|1522
6HCQ|1|51|A|1523
6HCQ|1|51|A|1524
6HCQ|1|51|A|1525
6HCQ|1|51|G|1526
*
6HCQ|1|51|C|1648
6HCQ|1|51|U|1649
6HCQ|1|51|A|1650
6HCQ|1|51|G|1651
6HCQ|1|51|U|1652
6HCQ|1|51|A|1653
6HCQ|1|51|G|1654
6HCQ|1|51|C|1655

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain j3

Ribosomal protein L37