IL_6HCQ_071

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGUAGUAG*CGAAACC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_071 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2457

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6HCQ|1|51|G|2357
6HCQ|1|51|G|2358
6HCQ|1|51|U|2359
6HCQ|1|51|A|2360
6HCQ|1|51|G|2361
6HCQ|1|51|U|2362
6HCQ|1|51|A|2363
6HCQ|1|51|G|2364
*
6HCQ|1|51|C|3858
6HCQ|1|51|G|3859
6HCQ|1|51|A|3860
6HCQ|1|51|A|3861
6HCQ|1|51|A|3862
6HCQ|1|51|C|3863
6HCQ|1|51|C|3864

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain P3

uL22