IL_6HCQ_123

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

6HCQ|1|51|C|4771

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_123 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3253

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6HCQ|1|51|G|4769
6HCQ|1|51|U|4770
6HCQ|1|51|C|4771
6HCQ|1|51|C|4772
6HCQ|1|51|C|4773
*
6HCQ|1|51|G|4862
6HCQ|1|51|G|4863
6HCQ|1|51|U|4864
6HCQ|1|51|C|4865

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain O3

uL13