IL_6HCQ_154

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

6HCQ|1|A2|G|507

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_154 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.2144

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6HCQ|1|A2|C|491
6HCQ|1|A2|C|492
6HCQ|1|A2|A|493
6HCQ|1|A2|C|494
6HCQ|1|A2|U|495
6HCQ|1|A2|C|496
*
6HCQ|1|A2|G|506
6HCQ|1|A2|G|507
6HCQ|1|A2|A|508
6HCQ|1|A2|G|509

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain K2

Ribosomal protein S9 (Predicted)

Chain Z2

eS24