IL_6HCQ_169

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6HCQ|1|A2|G|933

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_169 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.2686

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6HCQ|1|A2|C|931
6HCQ|1|A2|G|932
6HCQ|1|A2|G|933
6HCQ|1|A2|G|934
6HCQ|1|A2|G|935
*
6HCQ|1|A2|C|1007
6HCQ|1|A2|A|1008
6HCQ|1|A2|A|1009
6HCQ|1|A2|G|1010

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain C2

40S ribosomal protein S3a

Chain O2

uS15

Chain b2

eS26

Chain c3

eL30