IL_6HCQ_349

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_349 not in the Motif Atlas

Homologous match to IL_8CRE_442

Geometric discrepancy: 0.1633

The information below is about IL_8CRE_442

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6HCQ|1|A2|G|1168
6HCQ|1|A2|G|1169
6HCQ|1|A2|A|1170
6HCQ|1|A2|G|1171
6HCQ|1|A2|U|1172
6HCQ|1|A2|A|1173
6HCQ|1|A2|U|1174
6HCQ|1|A2|G|1175
*
6HCQ|1|A2|U|1186
6HCQ|1|A2|G|1187
6HCQ|1|A2|A|1188
6HCQ|1|A2|A|1189
6HCQ|1|A2|A|1190
6HCQ|1|A2|C|1191

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain Y2

uS12

Chain n3

eL41