IL_6HD7_088

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6HD7|1|1|A|2242, 6HD7|1|1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_088 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.1233

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6HD7|1|1|U|2200
6HD7|1|1|G|2201
*
6HD7|1|1|U|2241
6HD7|1|1|A|2242
6HD7|1|1|A|2243
6HD7|1|1|A|2244

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E

60S ribosomal protein L2-A