IL_6HD7_119

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6HD7|1|1|U|3056, 6HD7|1|1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_119 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2656

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6HD7|1|1|U|3054
6HD7|1|1|U|3055
6HD7|1|1|U|3056
6HD7|1|1|U|3057
6HD7|1|1|U|3058
6HD7|1|1|G|3059
*
6HD7|1|1|C|3084
6HD7|1|1|G|3085
6HD7|1|1|A|3086
6HD7|1|1|A|3087
6HD7|1|1|G|3088

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain Y

60S ribosomal protein L24-A

Chain f

60S ribosomal protein L31-A