IL_6HD7_138
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HD7_138 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.3089
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6HD7|1|3|G|21
6HD7|1|3|A|22
6HD7|1|3|A|23
6HD7|1|3|A|24
6HD7|1|3|G|25
6HD7|1|3|C|26
6HD7|1|3|A|27
*
6HD7|1|3|U|53
6HD7|1|3|U|54
6HD7|1|3|A|55
6HD7|1|3|A|56
6HD7|1|3|G|57
6HD7|1|3|C|58
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L5
- Chain M
- 60S ribosomal protein L11-A
Coloring options: