IL_6HMA_033
3D structure
- PDB id
- 6HMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 6HMA|1|A|A|1200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HMA_033 not in the Motif Atlas
- Homologous match to IL_4WF9_036
- Geometric discrepancy: 0.0928
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
6HMA|1|A|C|1042
6HMA|1|A|U|1043
6HMA|1|A|A|1044
6HMA|1|A|A|1045
6HMA|1|A|G|1046
*
6HMA|1|A|C|1197
6HMA|1|A|G|1198
6HMA|1|A|A|1199
6HMA|1|A|A|1200
6HMA|1|A|G|1201
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain O
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L21
- Chain X
- 50S ribosomal protein L30
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