3D structure

PDB id
6HMA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.65 Å

Loop

Sequence
CCCAGACAA*UCGAG
Length
14 nucleotides
Bulged bases
6HMA|1|A|A|1090
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HMA_040 not in the Motif Atlas
Geometric match to IL_5TBW_054
Geometric discrepancy: 0.3159
The information below is about IL_5TBW_054
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6HMA|1|A|C|1087
6HMA|1|A|C|1088
6HMA|1|A|C|1089
6HMA|1|A|A|1090
6HMA|1|A|G|1091
6HMA|1|A|A|1092
6HMA|1|A|C|1093
6HMA|1|A|A|1094
6HMA|1|A|A|1095
*
6HMA|1|A|U|1152
6HMA|1|A|C|1153
6HMA|1|A|G|1154
6HMA|1|A|A|1155
6HMA|1|A|G|1156

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain G
50S ribosomal protein L6

Coloring options:


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