IL_6HRM_023
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6HRM|1|1|A|532, 6HRM|1|1|U|534, 6HRM|1|1|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_023 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1984
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HRM|1|1|G|515
6HRM|1|1|PSU|516
6HRM|1|1|G|517
6HRM|1|1|C|518
6HRM|1|1|C|519
6HRM|1|1|A|520
6HRM|1|1|G|521
*
6HRM|1|1|C|528
6HRM|1|1|G|529
6HRM|1|1|G|530
6HRM|1|1|U|531
6HRM|1|1|A|532
6HRM|1|1|A|533
6HRM|1|1|U|534
6HRM|1|1|A|535
6HRM|1|1|C|536
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S4
- Chain q
- 30S ribosomal protein S12
Coloring options: