IL_6HRM_028
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 6HRM|1|1|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_028 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.1025
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6HRM|1|1|U|605
6HRM|1|1|G|606
6HRM|1|1|A|607
6HRM|1|1|A|608
6HRM|1|1|A|609
6HRM|1|1|U|610
6HRM|1|1|C|611
6HRM|1|1|C|612
*
6HRM|1|1|G|628
6HRM|1|1|A|629
6HRM|1|1|A|630
6HRM|1|1|C|631
6HRM|1|1|U|632
6HRM|1|1|G|633
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S8
- Chain u
- 30S ribosomal protein S16
- Chain v
- 30S ribosomal protein S17
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