IL_6HRM_101

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6HRM|1|1|A|2649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_101 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.086

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6HRM|1|1|U|2524
6HRM|1|1|U|2525
6HRM|1|1|A|2526
6HRM|1|1|A|2527
6HRM|1|1|G|2528
6HRM|1|1|U|2529
6HRM|1|1|G|2530
*
6HRM|1|1|C|2646
6HRM|1|1|U|2647
6HRM|1|1|A|2648
6HRM|1|1|A|2649
6HRM|1|1|A|2650

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36