IL_6HRM_132

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6HRM|1|1|A|3307, 6HRM|1|1|C|3322, 6HRM|1|1|U|3326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_132 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.07

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6HRM|1|1|U|3304
6HRM|1|1|G|3305
6HRM|1|1|C|3306
6HRM|1|1|A|3307
6HRM|1|1|A|3308
6HRM|1|1|A|3309
6HRM|1|1|C|3310
*
6HRM|1|1|G|3319
6HRM|1|1|G|3320
6HRM|1|1|A|3321
6HRM|1|1|C|3322
6HRM|1|1|G|3323
6HRM|1|1|U|3324
6HRM|1|1|A|3325
6HRM|1|1|U|3326
6HRM|1|1|A|3327

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2