IL_6HRM_163
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6HRM|1|1|G|4286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_163 not in the Motif Atlas
- Geometric match to IL_5J7L_345
- Geometric discrepancy: 0.0723
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6HRM|1|1|C|4142
6HRM|1|1|U|4143
6HRM|1|1|G|4144
6HRM|1|1|A|4145
6HRM|1|1|G|4146
*
6HRM|1|1|C|4280
6HRM|1|1|G|4281
6HRM|1|1|A|4282
6HRM|1|1|G|4283
6HRM|1|1|A|4284
6HRM|1|1|U|4285
6HRM|1|1|G|4286
6HRM|1|1|A|4287
6HRM|1|1|G|4288
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
Coloring options: