IL_6HRM_188

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_188 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2403

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6HRM|1|1|U|3226
6HRM|1|1|G|3227
6HRM|1|1|A|3228
6HRM|1|1|G|3229
6HRM|1|1|G|3230
6HRM|1|1|U|3231
*
6HRM|1|1|A|3241
6HRM|1|1|U|3242
6HRM|1|1|G|3243
6HRM|1|1|G|3244
6HRM|1|1|A|3245
6HRM|1|1|G|3246

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains