IL_6HTQ_185

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AAUAG*CGUU

Length

9 nucleotides

Bulged bases

6HTQ|1|A|A|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_185 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3634

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6HTQ|1|A|A|1533
6HTQ|1|A|A|1534
6HTQ|1|A|U|1535
6HTQ|1|A|A|1536
6HTQ|1|A|G|1537
*
6HTQ|1|A|C|1545
6HTQ|1|A|G|1546
6HTQ|1|A|U|1547
6HTQ|1|A|U|1548

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2