IL_6HTQ_193

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUGUU*GACCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_193 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.4704

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HTQ|1|A|A|2124
6HTQ|1|A|U|2125
6HTQ|1|A|G|2126
6HTQ|1|A|U|2127
6HTQ|1|A|U|2128
*
6HTQ|1|A|G|2219
6HTQ|1|A|A|2220
6HTQ|1|A|C|2221
6HTQ|1|A|C|2222
6HTQ|1|A|U|2223

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2