IL_6I7O_019

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6I7O|1|2|U|313, 6I7O|1|2|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_019 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1057

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6I7O|1|2|U|311
6I7O|1|2|A|312
6I7O|1|2|U|313
6I7O|1|2|C|314
6I7O|1|2|A|315
6I7O|1|2|A|316
*
6I7O|1|2|U|348
6I7O|1|2|U|349
6I7O|1|2|U|350
6I7O|1|2|C|351
6I7O|1|2|A|352
6I7O|1|2|A|353
6I7O|1|2|C|354
6I7O|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A

Chain c

40S ribosomal protein S23-A