IL_6I7O_096

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

6I7O|1|2b|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_096 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.141

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6I7O|1|2b|U|113
6I7O|1|2b|C|114
6I7O|1|2b|G|115
6I7O|1|2b|U|116
*
6I7O|1|2b|A|300
6I7O|1|2b|A|301

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Vb

40S ribosomal protein S8-A

Chain Xb

40S ribosomal protein S11-A