IL_6I7O_120
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6I7O|1|2b|A|579, 6I7O|1|2b|U|581
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_120 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1319
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6I7O|1|2b|G|562
6I7O|1|2b|U|563
6I7O|1|2b|G|564
6I7O|1|2b|C|565
6I7O|1|2b|C|566
6I7O|1|2b|A|567
6I7O|1|2b|G|568
*
6I7O|1|2b|C|575
6I7O|1|2b|G|576
6I7O|1|2b|G|577
6I7O|1|2b|U|578
6I7O|1|2b|A|579
6I7O|1|2b|A|580
6I7O|1|2b|U|581
6I7O|1|2b|U|582
6I7O|1|2b|C|583
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Ab
- 40S ribosomal protein S3
- Chain cb
- 40S ribosomal protein S23-A
- Chain gb
- 40S ribosomal protein S30-A
- Chain l
- mRNA
- Chain nb
- Transfer RNA; tRNA
Coloring options: