IL_6I7O_132

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_132 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.1333

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6I7O|1|2b|G|871
6I7O|1|2b|G|872
6I7O|1|2b|U|873
6I7O|1|2b|C|874
*
6I7O|1|2b|G|953
6I7O|1|2b|G|954
6I7O|1|2b|A|955
6I7O|1|2b|C|956

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Qb

40S ribosomal protein S1-A

Chain Yb

40S ribosomal protein S13

Chain fb

40S ribosomal protein S27-A