IL_6I7O_152
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6I7O|1|2b|U|1432, 6I7O|1|2b|G|1435
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_152 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1559
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6I7O|1|2b|U|1276
6I7O|1|2b|G|1277
6I7O|1|2b|G|1278
*
6I7O|1|2b|U|1430
6I7O|1|2b|C|1431
6I7O|1|2b|U|1432
6I7O|1|2b|G|1433
6I7O|1|2b|U|1434
6I7O|1|2b|G|1435
6I7O|1|2b|A|1436
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Ab
- 40S ribosomal protein S3
- Chain Cb
- 40S ribosomal protein S10-A
- Chain Jb
- 40S ribosomal protein S20
- Chain Mb
- 40S ribosomal protein S29-A
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