IL_6I7O_163

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_163 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1783

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6I7O|1|2b|G|1540
6I7O|1|2b|G|1541
6I7O|1|2b|G|1542
6I7O|1|2b|A|1543
6I7O|1|2b|U|1544
6I7O|1|2b|A|1545
*
6I7O|1|2b|U|1566
6I7O|1|2b|U|1567
6I7O|1|2b|C|1568
6I7O|1|2b|A|1569
6I7O|1|2b|A|1570
6I7O|1|2b|C|1571

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Hb

40S ribosomal protein S18-A

Chain Ib

40S ribosomal protein S19-A