IL_6I7O_171

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_171 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.1402

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

6I7O|1|2b|U|1665
6I7O|1|2b|U|1666
6I7O|1|2b|A|1667
*
6I7O|1|2b|U|1734
6I7O|1|2b|U|1735
6I7O|1|2b|G|1736

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Vb

40S ribosomal protein S8-A

Chain XB

60S ribosomal protein L23-A

Chain YQ

Large subunit ribosomal RNA; LSU rRNA