IL_6I7O_236
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_236 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.0796
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6I7O|1|BQ|G|1444
6I7O|1|BQ|U|1445
6I7O|1|BQ|A|1446
6I7O|1|BQ|G|1447
6I7O|1|BQ|U|1448
6I7O|1|BQ|A|1449
6I7O|1|BQ|G|1450
*
6I7O|1|BQ|C|2354
6I7O|1|BQ|G|2355
6I7O|1|BQ|A|2356
6I7O|1|BQ|A|2357
6I7O|1|BQ|A|2358
6I7O|1|BQ|C|2359
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AX
- 60S ribosomal protein L17-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: