IL_6I7O_292

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

6I7O|1|BQ|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_292 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.1502

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6I7O|1|BQ|U|3047
6I7O|1|BQ|A|3048
6I7O|1|BQ|A|3049
6I7O|1|BQ|U|3050
6I7O|1|BQ|U|3051
*
6I7O|1|BQ|A|3091
6I7O|1|BQ|C|3092
6I7O|1|BQ|C|3093
6I7O|1|BQ|A|3094

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AE

60S ribosomal protein L24-A

Chain BA

60S ribosomal protein L3