IL_6I7O_340

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6I7O|1|YQ|U|534, 6I7O|1|YQ|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_340 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1614

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|YQ|G|531
6I7O|1|YQ|A|532
6I7O|1|YQ|A|533
6I7O|1|YQ|U|534
6I7O|1|YQ|G|535
6I7O|1|YQ|U|536
6I7O|1|YQ|A|537
6I7O|1|YQ|G|538
*
6I7O|1|YQ|U|553
6I7O|1|YQ|A|554
6I7O|1|YQ|U|555
6I7O|1|YQ|U|556
6I7O|1|YQ|A|557
6I7O|1|YQ|U|558
6I7O|1|YQ|A|559
6I7O|1|YQ|G|560
6I7O|1|YQ|C|561

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XM

60S ribosomal protein L14-A

Chain YH

60S ribosomal protein L20-A

Chain YU

60S acidic ribosomal protein P0