IL_6I7O_348
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6I7O|1|YQ|A|933, 6I7O|1|YQ|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_348 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1086
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6I7O|1|YQ|G|805
6I7O|1|YQ|A|806
6I7O|1|YQ|A|807
6I7O|1|YQ|A|808
6I7O|1|YQ|G|809
*
6I7O|1|YQ|C|931
6I7O|1|YQ|U|932
6I7O|1|YQ|A|933
6I7O|1|YQ|G|934
6I7O|1|YQ|U|935
6I7O|1|YQ|A|936
6I7O|1|YQ|G|937
6I7O|1|YQ|C|938
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XJ
- 60S ribosomal protein L13-A
- Chain XQ
- 60S ribosomal protein L15-A
- Chain XR
- 60S ribosomal protein L28
- Chain YE
- 60S ribosomal protein L4-A
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