IL_6I7O_359
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_359 not in the Motif Atlas
- Homologous match to IL_5TBW_038
- Geometric discrepancy: 0.0979
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6I7O|1|YQ|G|991
6I7O|1|YQ|A|992
6I7O|1|YQ|G|993
6I7O|1|YQ|G|994
6I7O|1|YQ|U|995
6I7O|1|YQ|A|996
6I7O|1|YQ|A|997
*
6I7O|1|YQ|U|1052
6I7O|1|YQ|A|1053
6I7O|1|YQ|A|1054
6I7O|1|YQ|A|1055
6I7O|1|YQ|U|1056
6I7O|1|YQ|A|1057
6I7O|1|YQ|U|1058
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain YD
- 60S ribosomal protein L10
- Chain YI
- 60S ribosomal protein L5
- Chain YJ
- 60S ribosomal protein L21-A
- Chain YO
- 60S ribosomal protein L7-A
- Chain YR
- 5S ribosomal RNA; 5S rRNA
Coloring options: