3D structure

PDB id
6I7O (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
UUAAG*CUAUA
Length
10 nucleotides
Bulged bases
6I7O|1|YQ|U|1331
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6I7O_369 not in the Motif Atlas
Homologous match to IL_5TBW_048
Geometric discrepancy: 0.1179
The information below is about IL_5TBW_048
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6I7O|1|YQ|U|1167
6I7O|1|YQ|U|1168
6I7O|1|YQ|A|1169
6I7O|1|YQ|A|1170
6I7O|1|YQ|G|1171
*
6I7O|1|YQ|C|1328
6I7O|1|YQ|U|1329
6I7O|1|YQ|A|1330
6I7O|1|YQ|U|1331
6I7O|1|YQ|A|1332

Current chains

Chain YQ
25S ribosomal RNA

Nearby chains

Chain YB
60S ribosomal protein L18-A
Chain YG
60S ribosomal protein L32
Chain YK
60S ribosomal protein L33-A
Chain YO
60S ribosomal protein L7-A
Chain YR
5S ribosomal RNA; 5S rRNA

Coloring options:


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