IL_6I7O_375
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6I7O|1|YQ|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_375 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.2978
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6I7O|1|YQ|U|1218
6I7O|1|YQ|C|1219
6I7O|1|YQ|U|1220
6I7O|1|YQ|A|1221
6I7O|1|YQ|G|1222
6I7O|1|YQ|A|1223
6I7O|1|YQ|C|1224
6I7O|1|YQ|A|1225
6I7O|1|YQ|G|1226
*
6I7O|1|YQ|C|1283
6I7O|1|YQ|C|1284
6I7O|1|YQ|G|1285
6I7O|1|YQ|A|1286
6I7O|1|YQ|A|1287
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XD
- 60S ribosomal protein L9-A
- Chain YH
- 60S ribosomal protein L20-A
- Chain YU
- 60S acidic ribosomal protein P0
Coloring options: