IL_6I7O_382

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_382 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0684

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6I7O|1|YQ|G|1444
6I7O|1|YQ|U|1445
6I7O|1|YQ|A|1446
6I7O|1|YQ|G|1447
6I7O|1|YQ|U|1448
6I7O|1|YQ|A|1449
6I7O|1|YQ|G|1450
*
6I7O|1|YQ|C|2354
6I7O|1|YQ|G|2355
6I7O|1|YQ|A|2356
6I7O|1|YQ|A|2357
6I7O|1|YQ|A|2358
6I7O|1|YQ|C|2359

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XX

60S ribosomal protein L17-A

Chain YE

60S ribosomal protein L4-A

Chain YS

5.8S ribosomal RNA; 5.8S rRNA