IL_6I7O_389

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_389 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1256

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6I7O|1|YQ|U|1645
6I7O|1|YQ|G|1646
6I7O|1|YQ|A|1647
6I7O|1|YQ|A|1648
6I7O|1|YQ|U|1649
*
6I7O|1|YQ|A|1806
6I7O|1|YQ|G|1807
6I7O|1|YQ|G|1808
6I7O|1|YQ|A|1809
6I7O|1|YQ|A|1810

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XN

60S ribosomal protein L27-A

Chain XW

60S ribosomal protein L2-A

Chain YN

60S ribosomal protein L34-A