IL_6I7O_394

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_394 not in the Motif Atlas

Homologous match to IL_8C3A_078

Geometric discrepancy: 0.1225

The information below is about IL_8C3A_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|YQ|U|1702
6I7O|1|YQ|U|1703
6I7O|1|YQ|A|1704
6I7O|1|YQ|U|1705
6I7O|1|YQ|C|1706
6I7O|1|YQ|A|1707
*
6I7O|1|YQ|U|1737
6I7O|1|YQ|C|1738
6I7O|1|YQ|U|1739
6I7O|1|YQ|U|1740
6I7O|1|YQ|A|1741
6I7O|1|YQ|U|1742
6I7O|1|YQ|G|1743

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XT

60S ribosomal protein L43-A

Chain YN

60S ribosomal protein L34-A