IL_6I7O_395
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 6I7O|1|YQ|U|1716, 6I7O|1|YQ|A|1729
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_395 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1371
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6I7O|1|YQ|C|1711
6I7O|1|YQ|G|1712
6I7O|1|YQ|G|1713
6I7O|1|YQ|A|1714
6I7O|1|YQ|A|1715
6I7O|1|YQ|U|1716
6I7O|1|YQ|U|1717
*
6I7O|1|YQ|G|1727
6I7O|1|YQ|G|1728
6I7O|1|YQ|A|1729
6I7O|1|YQ|G|1730
6I7O|1|YQ|A|1731
6I7O|1|YQ|U|1732
6I7O|1|YQ|G|1733
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XN
- 60S ribosomal protein L27-A
- Chain XT
- 60S ribosomal protein L43-A
- Chain XY
- 60S ribosomal protein L30
- Chain YF
- 60S ribosomal protein L19-A
- Chain YN
- 60S ribosomal protein L34-A
- Chain Yb
- 40S ribosomal protein S13
Coloring options: